I installed all requirements for this tool and I run it too but as soon as I click on Open Exam... and give it the path to the dicom files and then when I click on Calculate Volume after some seconds the program gets closed and in CMD I see this error:
C:\Users\Lenovo\Downloads\HARTA-main>C:\Users\Lenovo\Downloads\HARTA-main\harta.py
Traceback (most recent call last):
File "C:\Users\Lenovo\Downloads\HARTA-main\harta.py", line 486, in generateVolume
patient_id, no_slices, vol = _automatic_.segmentEpicardialFat(DICOM_DATASET=dir, OUTPUT_FOLDER='aux_img/')
File "C:\Users\Lenovo\Downloads\HARTA-main\_automatic_.py", line 61, in segmentEpicardialFat
images_png = np.stack([convert_image_to_rgb(dicom, f'slices/{patient_id}_{i}', OUTPUT_FOLDER) for dicom, i in zip(median, range(0,no_slices))])
File "C:\Users\Lenovo\Downloads\HARTA-main\_automatic_.py", line 61, in <listcomp>
images_png = np.stack([convert_image_to_rgb(dicom, f'slices/{patient_id}_{i}', OUTPUT_FOLDER) for dicom, i in zip(median, range(0,no_slices))])
File "C:\Users\Lenovo\Downloads\HARTA-main\algorithm\basicOperations.py", line 9, in convert_image_to_rgb
plt.imsave(f'{output_folder}{filename}.png', image, cmap='gray')
File "C:\Users\Lenovo\AppData\Local\Programs\Python\Python38\lib\site-packages\matplotlib\pyplot.py", line 2251, in imsave
return matplotlib.image.imsave(fname, arr, **kwargs)
File "C:\Users\Lenovo\AppData\Local\Programs\Python\Python38\lib\site-packages\matplotlib\image.py", line 1611, in imsave
image.save(fname, **pil_kwargs)
File "C:\Users\Lenovo\AppData\Local\Programs\Python\Python38\lib\site-packages\PIL\Image.py", line 2161, in save
fp = builtins.open(filename, "w+b")
FileNotFoundError: [Errno 2] No such file or directory: 'aux_img/slices/21227013_0.png'
The error says No such file or directory: 'aux_img/slices/21227013_0.png' and here is the line 486 and some lines under it:
def generateVolume(self):
global patient_id
global no_slices
patient_id, no_slices, vol = _automatic_.segmentEpicardialFat(DICOM_DATASET=dir, OUTPUT_FOLDER='aux_img/')
self.volume.setText(str(round(vol, 1)))
self.refreshAfterAutomatic()
def generateNewVolume(self):
patient_id, no_slices, vol = _semiautomatic_.segmentEpicardialFat(DICOM_DATASET=dir, OUTPUT_FOLDER='aux_img/')
self.volume_2.setText(str(round(vol, 1)))
self.refreshAfterSemiAutomatic()
'INTERFACE MANAGER'
def updateImage(self, slice_id):
"Show container"
self.manual_intervention.show()
self.semiLabel.show()
self.afterEditionBox.hide()
self.slice_id = slice_id
self.editionHandler()
'Show the image with new contour'
self.imageHeart.setPixmap(QtGui.QPixmap(':/aux/edited_successfully_bg.png'))
And this is the link to the file.
Can you enlighten me how to fix this problem?