I am using AvalonDock as the docking manager for my application. I noticed that it has a Ctrl + Tab window (the NavigatorWindow) but that seems to have some odd hard-coded classifications. I switched my last LayoutAnchorable to a LayoutDocument, so at least I don't have things in different groups now, but I really don't need "Active Tool Windows" and "Active Files" doesn't make sense in my context.
Is there any way to customize this component? I'd ideally just like to hide the left list, and change the tile of the right list to something more generic like "Active Windows".

There is a style that you can override (see below). The NavigatorWindow itself has no dependency properties that you could use to configure it so I don't think you can do more than restyling - but maybe thats all you need :-)