Apologies in advance if this has already been asked and for my wording of this question as I am new to R.
Is there any way of making my code for subsampling sound files more efficient? I have 148 hours of recordings from 9 sites, for each site I am subsampling 12 1-min segments every 5 minutes. The way I am doing it at the moment works but it very time consuming. Is there a way of making this code more efficient?
###hour 3###
setwd("C:/Users/Cex/Desktop/R Studio/Audiomoth Files/Rural/Hodkinson")
hod3a<-readWave("20200820_020000.wav", from = 0, to = 1, units="minutes")
hod3b<-readWave("20200820_020000.wav", from = 5, to = 6, units="minutes")
hod3c<-readWave("20200820_020000.wav", from = 10, to = 11, units="minutes")
hod3d<-readWave("20200820_020000.wav", from = 15, to = 16, units="minutes")
hod3e<-readWave("20200820_020000.wav", from = 20, to = 21, units="minutes")
hod3f<-readWave("20200820_020000.wav", from = 25, to = 26, units="minutes")
hod3g<-readWave("20200820_020000.wav", from = 31, to = 32, units="minutes")
hod3h<-readWave("20200820_020000.wav", from = 35, to = 36, units="minutes")
hod3i<-readWave("20200820_020000.wav", from = 40, to = 41, units="minutes")
hod3j<-readWave("20200820_020000.wav", from = 45, to = 46, units="minutes")
hod3k<-readWave("20200820_020000.wav", from = 50, to = 51, units="minutes")
hod3l<-readWave("20200820_020000.wav", from = 55, to = 56, units="minutes")
setwd("C:/Users/Cex/Desktop/R Studio/Audiomoth Files/Rural/Hodkinson/hour - Copy (3)")
writeWave(hod3a, filename="hod3a.wav",extensible=FALSE)
writeWave(hod3b, filename="hod3b.wav",extensible=FALSE)
writeWave(hod3c, filename="hod3c.wav",extensible=FALSE)
writeWave(hod3d, filename="hod3d.wav",extensible=FALSE)
writeWave(hod3e, filename="hod3e.wav",extensible=FALSE)
writeWave(hod3f, filename="hod3f.wav",extensible=FALSE)
writeWave(hod3g, filename="hod3g.wav",extensible=FALSE)
writeWave(hod3h, filename="hod3h.wav",extensible=FALSE)
writeWave(hod3i, filename="hod3i.wav",extensible=FALSE)
writeWave(hod3j, filename="hod3j.wav",extensible=FALSE)
writeWave(hod3k, filename="hod3k.wav",extensible=FALSE)
writeWave(hod3l, filename="hod3l.wav",extensible=FALSE)
setwd("C:/Users/Cex/Desktop/R Studio/Audiomoth Files/Rural/Hodkinson/hour - Copy (3)")
multiple_sounds(directory = "C:/Users/Cex/Desktop/R Studio/Audiomoth Files/Rural/Hodkinson/hour - Copy (3)", resultfile = "ndsi_resultS2.csv", soundindex = "ndsi", no_cores = "-2")
multiple_sounds(directory = "C:/Users/Cex/Desktop/R Studio/Audiomoth Files/Rural/Hodkinson/hour - Copy (3)", resultfile = "adi_results.csv", soundindex = "acoustic_diversity", no_cores = "-2")
multiple_sounds(directory = "C:/Users/Cex/Desktop/R Studio/Audiomoth Files/Rural/Hodkinson/hour - Copy (3)", resultfile = "aei_results.csv", soundindex = "acoustic_evenness", no_cores = "-2")
multiple_sounds(directory = "C:/Users/Cex/Desktop/R Studio/Audiomoth Files/Rural/Hodkinson/hour - Copy (3)", resultfile = "aci_results.csv", soundindex = "acoustic_complexity", no_cores = "-2")
multiple_sounds(directory = "C:/Users/Cex/Desktop/R Studio/Audiomoth Files/Rural/Hodkinson/hour - Copy (3)", resultfile = "H_results.csv", soundindex = "H", no_cores = "-2")
###hour 4###
setwd("C:/Users/Cex/Desktop/R Studio/Audiomoth Files/Rural/Hodkinson")
hod4a<-readWave("20200820_030000.wav", from = 0, to = 1, units="minutes")
hod4b<-readWave("20200820_030000.wav", from = 5, to = 6, units="minutes")
hod4c<-readWave("20200820_030000.wav", from = 10, to = 11, units="minutes")
hod4d<-readWave("20200820_030000.wav", from = 15, to = 16, units="minutes")
hod4e<-readWave("20200820_030000.wav", from = 20, to = 21, units="minutes")
hod4f<-readWave("20200820_030000.wav", from = 25, to = 26, units="minutes")
hod4g<-readWave("20200820_030000.wav", from = 31, to = 32, units="minutes")
hod4h<-readWave("20200820_030000.wav", from = 35, to = 36, units="minutes")
hod4i<-readWave("20200820_030000.wav", from = 40, to = 41, units="minutes")
hod4j<-readWave("20200820_030000.wav", from = 45, to = 46, units="minutes")
hod4k<-readWave("20200820_030000.wav", from = 50, to = 51, units="minutes")
hod4l<-readWave("20200820_030000.wav", from = 55, to = 56, units="minutes")
setwd("C:/Users/Cex/Desktop/R Studio/Audiomoth Files/Rural/Hodkinson/hour - Copy (4)")
writeWave(hod4a, filename="hod4a.wav",extensible=FALSE)
writeWave(hod4b, filename="hod4b.wav",extensible=FALSE)
writeWave(hod4c, filename="hod4c.wav",extensible=FALSE)
writeWave(hod4d, filename="hod4d.wav",extensible=FALSE)
writeWave(hod4e, filename="hod4e.wav",extensible=FALSE)
writeWave(hod4f, filename="hod4f.wav",extensible=FALSE)
writeWave(hod4g, filename="hod4g.wav",extensible=FALSE)
writeWave(hod4h, filename="hod4h.wav",extensible=FALSE)
writeWave(hod4i, filename="hod4i.wav",extensible=FALSE)
writeWave(hod4j, filename="hod4j.wav",extensible=FALSE)
writeWave(hod4k, filename="hod4k.wav",extensible=FALSE)
writeWave(hod4k, filename="hod4l.wav",extensible=FALSE)
setwd("C:/Users/Cex/Desktop/R Studio/Audiomoth Files/Rural/Hodkinson/hour - Copy (4)")
multiple_sounds(directory = "C:/Users/Cex/Desktop/R Studio/Audiomoth Files/Rural/Hodkinson/hour - Copy (4)", resultfile = "ndsi_resultS2.csv", soundindex = "ndsi", no_cores = "-2")
multiple_sounds(directory = "C:/Users/Cex/Desktop/R Studio/Audiomoth Files/Rural/Hodkinson/hour - Copy (4)", resultfile = "adi_results.csv", soundindex = "acoustic_diversity", no_cores = "-2")
multiple_sounds(directory = "C:/Users/Cex/Desktop/R Studio/Audiomoth Files/Rural/Hodkinson/hour - Copy (4)", resultfile = "aei_results.csv", soundindex = "acoustic_evenness", no_cores = "-2")
multiple_sounds(directory = "C:/Users/Cex/Desktop/R Studio/Audiomoth Files/Rural/Hodkinson/hour - Copy (4)", resultfile = "aci_results.csv", soundindex = "acoustic_complexity", no_cores = "-2")
multiple_sounds(directory = "C:/Users/Cex/Desktop/R Studio/Audiomoth Files/Rural/Hodkinson/hour - Copy (4)", resultfile = "H_results.csv", soundindex = "H", no_cores = "-2")
I am currently having to go through the code for each hour and change the numbers of the hours manually which takes a great deal of time. I hope I have communicated this correctly, any help is greatly appreciated.
We could create two
sequences and loop over them withMap, read the data withreadWavespecifying thefrom,toas the looped values and store it in alistSimilarly for writing the file