When running val bundle = (Compile / fastOptJS / webpack).value in my build.sbt, I get the following files in the 'bundle':
What I am missing is the -fastopt-bundler.js.map.
If I check target/scala-2.12/scalajs-bundler/main the file is there!
The only setting of my build.sbt is:
webpackBundlingMode := BundlingMode.LibraryAndApplication()

There is an open issue with scalajs-bundler Plugin:
https://github.com/scalacenter/scalajs-bundler/issues/290