I create dot file by my perl script. Here is subgraphs which contains same node. eg:
subgraph{aa->bb->cc;}
subgraph{dd->bb->ee;}
I know those subgraph use same namespace, so my result output is a mess.
In each subgraph, I can make them unique, like bb and bb_1 below,
subgraph{aa->bb->cc; bb_1->dd;}
but it hard to make all node in all subgraphs unique.
Is there some methods to make each subgraph "strict" or use different namespace?
gvpackwill automatically rename nodes that are in clusters if you use it to put multiple sub-graphs into one graph. See Graph of Graphs in Graphviz for an example.