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20
Devhide
2024-03-31T01:16:32.490000
46
Views
Problems with wilcard
Published on
31 March 2024 at 01:16
#snakemake
33
Views
Why am i getting this warning: reason: Rules with neither input nor output files are always executed?
Published on
30 March 2024 at 06:09
#snakemake
52
Views
Snakemake remote rules re-read config file?
Published on
28 March 2024 at 10:00
#automation
#cluster-computing
#snakemake
#hpc
40
Views
Having problems executing "include" in snakemake
Published on
27 March 2024 at 12:14
#bash
#snakemake
37
Views
Snakemake issue: wildcard problems when trying to force a rule to be ran after another rule
Published on
26 March 2024 at 16:54
#automation
#output
#wildcard
#snakemake
40
Views
How to apply python iloc on snakemake input file?
Published on
26 March 2024 at 13:02
#python
#pandas
#function
#indexing
#snakemake
45
Views
How to derive snakemake wildcards from python objects?
Published on
26 March 2024 at 09:56
#python
#bioinformatics
#snakemake
54
Views
Error in Snakefile while running the PyPSA-EUR first tutorial
Published on
25 March 2024 at 10:26
#snakemake
#pypsa
20
Views
How does one get Mathematica `wolframscript` to behave (in parallel or otherwise) when run via `snakemake`?
Published on
21 March 2024 at 12:50
#wolfram-mathematica
#snakemake
#wolfram-language
59
Views
Error in the Snakefile when running tutorial
Published on
21 March 2024 at 12:09
#snakemake
#pypsa
16
Views
Importing python modules from other packages with snakemake
Published on
18 March 2024 at 17:20
#snakemake
19
Views
How to build a snakemake workflow with variable number of input files using checkpoints?
Published on
16 March 2024 at 22:35
#snakemake
35
Views
Snakemake workflows work independently but fail when imported as a module
Published on
14 March 2024 at 15:57
#python
#bioinformatics
#snakemake
36
Views
Submitted Snakemake Rules Start to Run and Fail Immediately without throwing any Error but Snakemake Keeps Running
Published on
14 March 2024 at 13:39
#python
#bioinformatics
#snakemake
33
Views
Snakemake taking the whole wildcard list as input
Published on
13 March 2024 at 21:38
#snakemake
18
Views
How to copy all files (rules, envs,..) called by a Snakefile into a new repository?
Published on
13 March 2024 at 16:27
#snakemake
41
Views
How to run a sample one by one in snakemake
Published on
06 March 2024 at 23:43
#snakemake
37
Views
Snakemake: Handle paired reads in a directory
Published on
06 March 2024 at 07:41
#bioinformatics
#snakemake
32
Views
What's the advantage to specifying a log in the log section of a snakemake rule rather than specifying it in params?
Published on
04 March 2024 at 07:05
#logging
#snakemake
37
Views
how to set output directory in shell in snakemake workflow
Published on
03 March 2024 at 20:13
#python
#snakemake
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