I encountered a problem when initializing the renv environment with an already existing renv.lock file.
Starting the installation with renv::init() installs the first packages without problems. Then, always at the same position, after/while installation of the ggtree package I get a fatal error leading to the R session to abort.
I have never seen the subsequent error message before:
*** buffer overflow detected ***: terminated [13097:13097:20240124,174659.828353:ERROR process_memory_range.cc:86] read out of range [13097:13097:20240124,174659.828461:ERROR elf_image_reader.cc:558] missing nul-terminator [13097:13097:20240124,174659.828633:ERROR elf_dynamic_array_reader.h:61] tag not found [13097:13097:20240124,174659.832610:ERROR elf_dynamic_array_reader.h:61] tag not found [13097:13097:20240124,174659.832755:ERROR elf_dynamic_array_reader.h:61] tag not found [13097:13097:20240124,174659.832878:ERROR elf_dynamic_array_reader.h:61] tag not found [13097:13097:20240124,174659.833010:ERROR elf_dynamic_array_reader.h:61] tag not found [13097:13097:20240124,174659.833155:ERROR elf_dynamic_array_reader.h:61] tag not found [13097:13097:20240124,174659.833290:ERROR elf_dynamic_array_reader.h:61] tag not found [13097:13097:20240124,174659.834376:ERROR elf_dynamic_array_reader.h:61] tag not found [13097:13097:20240124,174659.834499:ERROR elf_dynamic_array_reader.h:61] tag not found [13097:13097:20240124,174659.846062:ERROR directory_reader_posix.cc:42] opendir: no such file or directory (2)
NOTE: Installing ggtree outside of renv works without errors:
# Install and load renv (if not already installed)
if (!require("renv", quietly = TRUE, lib.loc = "~/R-4.3.2/library")) {
install.packages("renv", lib = "~/R-4.3.2/library")
}
library(renv, lib.loc = "~/R-4.3.2/library")
# Initialize and restore the renv environment
renv::init(force = T)
renv::restore()
