I am trying to run a nextflow pipeline and getting the error as shown below
module load nextflow/23.04.3
nextflow run main.nf -ansi-log false -profile singularity,cluster --outdir /cluster/work/pipeline_runs/RNA/outdir
N E X T F L O W ~ version 23.04.3
Launching `main.nf` [silly_shirley] DSL2 - revision: 4c6c61737a
ERROR ~ Error executing process > 'fastqc (1)'
Caused by:
Not a valid path value: 'status'
Tip: view the complete command output by changing to the process work dir and entering the command `cat .command.out`
-- Check '.nextflow.log' file for details
Execution cancelled -- Finishing pending tasks before exit
Here are the error contents of the .nextflow.log file. The path /cluster/work/nextflow-rna_seq is where my nextflow pipeline is, nextflow is looking for a bin folder in this path
Feb-06 07:07:55.762 [main] DEBUG nextflow.Session - Script base path does not exist or is not a directory: /cluster/work/nextflow-rna_seq/bin
......
......
Feb-06 07:07:59.181 [Actor Thread 3] ERROR nextflow.processor.TaskProcessor - Error executing process > 'fastqc (1)'
Caused by:
Not a valid path value: 'status'