I'm using 2018-12 with Java 8, but I'm running Eclipse itself with Java 11.
I have version "1.10.0.20181127-2120" of the m2e plugin.
I have a bunch of projects with similar characteristics. Maven projects run with Spring Boot. They are all stored in git.
For some reason, one of those projects was somewhat brain-damaged this morning. It still would build fine from the command line. Eclipse still knew it was a maven project, but it had no source folders. The .classpath file wasn't empty, it was just very minimal.
I got this particular problem resolved by simply copying the .classpath file from a similar project into this project. That fixed most of the problems, but I remembered that this one project uses a code generator plugin along with the "build-helper-maven-plugin" to indicate where the source is being generated. I found that Eclipse didn't have the generated sources folder as a source folder. I thought adding the "build-helper-maven-plugin" reference was what I needed to do to make Eclipse M2E to automatically detect this, but it doesn't appear to be working.
Once I manually added the generated sources folder as a source folder, that cleaned out the last compile errors.
This is a hopefully relevant excerpt from my pom:
<plugin>
<groupId>org.codehaus.mojo</groupId>
<artifactId>build-helper-maven-plugin</artifactId>
<executions>
<execution>
<phase>generate-sources</phase>
<goals>
<goal>add-source</goal>
</goals>
<configuration>
<sources>
<source>${project.build.directory}/java-gen</source>
</sources>
</configuration>
</execution>
</executions>
</plugin>
<plugin>
<groupId>org.jsonschema2pojo</groupId>
<artifactId>jsonschema2pojo-maven-plugin</artifactId>
<version>0.4.34</version>
<configuration>
<sourcePaths>
<sourcePath>${basedir}/src/main/schema/...</sourcePath>
<sourcePath>${basedir}/src/main/schema/...</sourcePath>
</sourcePaths>
<targetPackage>...</targetPackage>
<annotationStyle>jackson2</annotationStyle>
<useCommonsLang3>true</useCommonsLang3>
<useDoubleNumbers>true</useDoubleNumbers>
<includeAccessors>true</includeAccessors>
<includeAdditionalProperties>true</includeAdditionalProperties>
<sourceType>jsonschema</sourceType>
<generateBuilders>true</generateBuilders>
<includeJsr303Annotations>true</includeJsr303Annotations>
</configuration>
<executions>
<execution>
<goals>
<goal>generate</goal>
</goals>
</execution>
</executions>
</plugin>
Update:
Deleting the Eclipse project and reimporting from git made no difference. Same result.