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24
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Change Fasta names to identifier values with conditional statement; error due to unequal lengths

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#paste #fasta #names
24
Views

How to convert .pep file extension to .fasta in python

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#python #bioinformatics #fasta
49
Views

How to iterate a list created with SeqIO using re.findall, FASTA-input

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#python #regex #biopython #fasta #python-3.12
49
Views

Substitute pattern by an other pattern from two lists using while read line and sed

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#awk #sed #while-loop #fasta
52
Views

Biopython and accessing fasta file stored in the computer

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#python #biopython #fasta
127
Views

How to substitute a specific string pattern in a multi-line FASTA file using bash?

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#bash #awk #sed #bioinformatics #fasta
84
Views

Replacing fasta header without key-value pair file

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#awk #bioinformatics #fasta
68
Views

How to linearize fasta sequences within a not only fasta file?

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#awk #fasta
93
Views

How should I go about implementing conditional string replacements in a fasta file?

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#bash #awk #sed #bioinformatics #fasta
55
Views

Make them unique based on the initial segment of names in a FASTA file using R

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#r #fasta
195
Views

Sort FASTA file according to length of sequences

Published on
#bioinformatics #fasta
79
Views

renaming fasta file using a mapping txt file

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#unix #sed #rename #bioinformatics #fasta
92
Views

Can't open fasta file into phyDat format

Published on
#r #file #bioinformatics #fasta #dna-sequence
93
Views

How to filter "productive" amino acid sequences

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#python #r #sequence #fasta
63
Views

edit only the 1st column of a fasta header by removing strings after '-'

Published on
#awk #sed #fasta
153
Views

Count reads in fasta file (loop)

Published on
#shell #awk #fasta
38
Views

Using tqdm with downloading text from UniProt - response not written in target file

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#python #download #progress #fasta #tqdm
28
Views

error: Snakefile "test/Snakefile" not found

Published on
#fasta #pathogen
188
Views

How to extract information from fasta header and make columns in a df in R

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#r #string #bioinformatics #fasta
23
Views

Bwa-meme indexing

Published on
#indexing #path #fasta

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