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20
23
Views

IRanges output length not equal to input

Published on
#bioconductor #genomicranges
19
Views

S4Vectors::expand on granges rows based on multiple columns

Published on
#r #genomicranges
24
Views

Generate Random Permutations of Genomic Ranges using Nullranges (matchedranges or bootranges)

Published on
#r #genome #genomicranges #permute
15
Views

append overlapping genomic intervals

Published on
#append #genomicranges
26
Views

Concatenate consecutive iranges coordinates with same metadata value

Published on
#r #bioconductor #genomicranges
681
Views

Find which column ranges overlap after grouping in R

Published on
#r #dplyr #data.table #intervals #genomicranges
159
Views

Remove hits of overlapping ranges based on another column in R

Published on
#r #dplyr #data.table #genomicranges
45
Views

Find ranges that are shared by 80% or more of 10 GRanges objects

Published on
#r #genomicranges
2.5k
Views

Can convert Granges to data.frame

Published on
#r #bioinformatics #bioconductor #genomicranges #iranges
76
Views

R - remove specific numeric ranges from a dataframe based on second dataframe and reshape everything

Published on
#r #dplyr #genomicranges
86
Views

Combine GRangesList with unified breakpoints

Published on
#r #genomicranges
343
Views

How to get findOverlapped region?

Published on
#r #bioinformatics #overlap #genomicranges
248
Views

How to calculate length distribution and coverage distribution bed file

Published on
#r #dataframe #bioinformatics #bioconductor #genomicranges
191
Views

finding overlap using GenomicRanges with two data sets specifying minoverlap Function

Published on
#r #range #bioinformatics #overlap #genomicranges
97
Views

R: For loop to subset Granges objects by list

Published on
#r #bioinformatics #genomicranges
151
Views

How to remove overlapping sequences from two datatables?

Published on
#r #performance #data.table #genomicranges
110
Views

Fast way to find overlaps in linear intervals

Published on
#r #merge #intervals #genomicranges #iranges
49
Views

How to query a GRanges object into a object that can be queried again?

Published on
#r #rna-seq #genomicranges
201
Views

Overlapping and sorting counts from small, equally sized, continuous bins into irregular, uneven bins

Published on
#r #bioinformatics #overlap #bioconductor #genomicranges
482
Views

Finding overlaps between 2 ranges and their overlapped region lengths?

Published on
#r #genome #genomicranges

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