Question

Limma regression with interaction

score 43 · Answer 1 · 2024-02-05T21:14:50.477000

43

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Limma regression with interaction

Published on 05 February 2024 at 21:14

score 61 · Answer 2 · 2023-12-11T15:58:21.887000

61

Views

Difficulty Reproducing log Fold Change Calculation Using tmod Package in R

Published on 11 December 2023 at 15:58

score 222 · Answer 3 · 2023-11-22T17:24:37.417000

222

Views

Limma/DESeq2 for unbalanced nested design (paired samples)

Published on 22 November 2023 at 17:24

score 44 · Answer 4 · 2023-07-19T13:10:35.403000

44

Views

smallRNA-seq analysis batch correction in limma

Published on 19 July 2023 at 13:10

score 41 · Answer 5 · 2023-05-31T21:39:15.537000

41

Views

limma model.matrix design for crossover study

Published on 31 May 2023 at 21:39

score 75 · Answer 6 · 2023-05-29T23:02:32.893000

75

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Multi-group differential gene expression for time-series treatment data

Published on 29 May 2023 at 23:02

score 82 · Answer 7 · 2023-05-10T21:04:05.623000

82

Views

Can't get design matrix for limma to include all levels of factors

Published on 10 May 2023 at 21:04

score 68 · Answer 8 · 2023-04-21T07:19:30.787000

68

Views

Cyclic loess leading to complete rows of NA

Published on 21 April 2023 at 07:19

score 446 · Answer 9 · 2023-01-18T01:38:27.133000

446

Views

Reorder dendrogram in R

Published on 18 January 2023 at 01:38

score 77 · Answer 10 · 2022-08-01T09:38:59.460000

77

Views

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Published on 01 August 2022 at 09:38

score 746 · Answer 11 · 2022-04-06T08:21:25.057000

746

Views

LIMMA: design matrices and procedures

Published on 06 April 2022 at 08:21

score 536 · Answer 12 · 2022-04-03T11:27:57.243000

536

Views

Negative values after Limma's batch effect correction

Published on 03 April 2022 at 11:27

score 985 · Answer 13 · 2022-02-16T17:45:31.883000

985

Views

Limma moderated t test VS stat_compare_means: why do the values differ?

Published on 16 February 2022 at 17:45

score 261 · Answer 14 · 2021-04-21T16:09:54.347000

261

Views

How do I tell R package Limma what to use as "targets" in read.idat()?

Published on 21 April 2021 at 16:09

score 156 · Answer 15 · 2021-02-20T10:03:57.677000

156

Views

how to convert MA list to expression matrix?

Published on 20 February 2021 at 10:03

score 611 · Answer 16 · 2020-06-10T08:22:53.513000

611

Views

coefficient not estimable model.matrix

Published on 10 June 2020 at 08:22

score 349 · Answer 17 · 2020-04-20T20:51:34.007000

349

Views

Error trying to add colours to R ggplot (volcano plot)

Published on 20 April 2020 at 20:51

score 39 · Answer 18 · 2020-04-19T10:59:30.817000

39

Views

How to select/exclude specific conditions or cell types for further analysis with Limma?

Published on 19 April 2020 at 10:59

score 119 · Answer 19 · 2020-04-06T16:40:07.850000

119

Views

Turn string into the contents of a function in R for pipeline

Published on 06 April 2020 at 16:40

score 521 · Answer 20 · 2020-02-28T02:32:26.170000

521

Views

Limma to Compare Bulk RNA Seq using makeContrasts and eBayes

Published on 28 February 2020 at 02:32

List Question

Limma regression with interaction

Difficulty Reproducing log Fold Change Calculation Using tmod Package in R

Limma/DESeq2 for unbalanced nested design (paired samples)

smallRNA-seq analysis batch correction in limma

limma model.matrix design for crossover study

Multi-group differential gene expression for time-series treatment data

Can't get design matrix for limma to include all levels of factors

Cyclic loess leading to complete rows of NA

Reorder dendrogram in R

Building model matrix to correct for batch effect with biological and technical replicates

LIMMA: design matrices and procedures

Negative values after Limma's batch effect correction

Limma moderated t test VS stat_compare_means: why do the values differ?

How do I tell R package Limma what to use as "targets" in read.idat()?

how to convert MA list to expression matrix?

coefficient not estimable model.matrix

Error trying to add colours to R ggplot (volcano plot)

How to select/exclude specific conditions or cell types for further analysis with Limma?

Turn string into the contents of a function in R for pipeline

Limma to Compare Bulk RNA Seq using makeContrasts and eBayes

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