Question

How to add and specify additional ranks to phyloseq taxonomy?

score 166 · Answer 1 · 2023-07-19T00:52:38.440000

166

Views

How to add and specify additional ranks to phyloseq taxonomy?

Published on 19 July 2023 at 00:52

score 116 · Answer 2 · 2023-06-23T05:49:39.930000

116

Views

I am triying to install qiime2-2023.2 from Miniconda3, but i get this error

Published on 23 June 2023 at 05:49

score 29 · Answer 3 · 2023-06-09T12:50:52.787000

29

Views

Why is my centred log ratio transformation on a distance matrix in R not symmetrical?

Published on 09 June 2023 at 12:50

score 62 · Answer 4 · 2023-06-08T19:04:42.080000

62

Views

Why is the distance matrix I upload into R not symmetric?

Published on 08 June 2023 at 19:04

score 42 · Answer 5 · 2023-05-30T16:37:59.447000

42

Views

How Can You Reformat an OTU Table from qiime2 pathway to Include Sequence IDs?

Published on 30 May 2023 at 16:37

score 42 · Answer 6 · 2023-05-26T10:00:51.070000

42

Views

dada2 denoise issues : qiime2-2019.4/lib/R/etc/ldpaths missing

Published on 26 May 2023 at 10:00

score 43 · Answer 7 · 2023-05-23T22:13:57.123000

43

Views

TypeError: Parameter 'metadata' received Metadata as an argument, which is incompatible with parameter type: MetadataColumn[Categorical]

Published on 23 May 2023 at 22:13

score 20 · Answer 8 · 2023-05-03T20:32:50.817000

20

Views

SyntaxError in python script that creates a qiime2 manifest file

Published on 03 May 2023 at 20:32

score 81 · Answer 9 · 2023-03-18T11:21:51.977000

81

Views

Input distance matrix from QIIME2 to R

Published on 18 March 2023 at 11:21

score 273 · Answer 10 · 2022-12-18T21:39:31.850000

273

Views

I am using ALDEx package for analysis of PICRUST2 output and gave me an error

Published on 18 December 2022 at 21:39

score 391 · Answer 11 · 2022-12-15T15:47:06.937000

391

Views

QIIME2 error when running diversity analyses

Published on 15 December 2022 at 15:47

score 890 · Answer 12 · 2022-11-15T12:14:36.310000

890

Views

Qiime2 installation from pre built yaml file into conda environment doesnt work because of genomeinfodbdata package, how to fix?

Published on 15 November 2022 at 12:14

score 313 · Answer 13 · 2022-11-10T03:22:41.517000

313

Views

Using Docker to install QIIME2

Published on 10 November 2022 at 03:22

score 63 · Answer 14 · 2022-11-09T17:27:31.857000

63

Views

loading a pandas table from a weird txt file

Published on 09 November 2022 at 17:27

score 1.1k · Answer 15 · 2022-10-20T11:45:26.693000

1.1k

Views

Error : loadNamespace(x) there is no package called ‘devtools’

Published on 20 October 2022 at 11:45

score 478 · Answer 16 · 2022-10-12T22:29:27.520000

478

Views

Unsatisfiable error installing QIIME in conda environment glibc==2.31=0

Published on 12 October 2022 at 22:29

score 1.4k · Answer 17 · 2022-02-25T06:55:20.307000

Plugin error from dada2: An error was encountered while running DADA2 in R (return code 1), please inspect stdout and stderr to learn more

score 575 · Answer 18 · 2021-07-06T19:02:17.813000

575

Views

How do I import my .qz files from illumina sequencing into qiime2 via a manifest file?

Published on 06 July 2021 at 19:02

score 67 · Answer 19 · 2021-04-16T08:25:18.727000

67

Views

How to extract the same data from different files

Published on 16 April 2021 at 08:25

score 100 · Answer 20 · 2021-04-13T13:19:09.783000

100

Views

Rename header in R with extracted information from the header

Published on 13 April 2021 at 13:19

List Question

How to add and specify additional ranks to phyloseq taxonomy?

I am triying to install qiime2-2023.2 from Miniconda3, but i get this error

Why is my centred log ratio transformation on a distance matrix in R not symmetrical?

Why is the distance matrix I upload into R not symmetric?

How Can You Reformat an OTU Table from qiime2 pathway to Include Sequence IDs?

dada2 denoise issues : qiime2-2019.4/lib/R/etc/ldpaths missing

TypeError: Parameter 'metadata' received Metadata as an argument, which is incompatible with parameter type: MetadataColumn[Categorical]

SyntaxError in python script that creates a qiime2 manifest file

Input distance matrix from QIIME2 to R

I am using ALDEx package for analysis of PICRUST2 output and gave me an error

QIIME2 error when running diversity analyses

Qiime2 installation from pre built yaml file into conda environment doesnt work because of genomeinfodbdata package, how to fix?

Using Docker to install QIIME2

loading a pandas table from a weird txt file

Error : loadNamespace(x) there is no package called ‘devtools’

Unsatisfiable error installing QIIME in conda environment glibc==2.31=0

Plugin error from dada2: An error was encountered while running DADA2 in R (return code 1), please inspect stdout and stderr to learn more

How do I import my .qz files from illumina sequencing into qiime2 via a manifest file?

How to extract the same data from different files

Rename header in R with extracted information from the header

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