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20
38
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Nextflow script for performing quality control and trimming the sequence

Published on
#nextflow #fastq
21
Views

How do I pull down single cell RNA sequencing data from NCBI and process with python?

Published on
#python #fastq #ncbi #rna-seq
35
Views

Concatenate FASTQ files from 2 folders with the same structure

Published on
#bash #fastq
47
Views

Unable to extract multiple .fastq.gz files on windows

Published on
#windows #command-line-interface #gzip #fastq
16
Views

Why does Phred+ encoding changes after trimming fastq files?

Published on
#fastq
16
Views

FastQ Joiner and BWA-MEM Mapping

Published on
#mapping #fastq #genome
52
Views

Nextflow only processes one of my paired-end samples

Published on
#process #nextflow #fastq
42
Views

Create a table from a list of strings in python (.fastq files path mapping)

Published on
#python #pandas #fastq
29
Views

Trimming fastq.gz files

Published on
#sequence #fastq
266
Views

Getting reads from one fastq file that are not found in another fastq file

Published on
#bioinformatics #biopython #fastq
168
Views

Adding retry to shell script

Published on
#shell #fastq #ncbi #common-workflow-language
123
Views

Why does wget fail when running multiple wget commands targeting the ENA in a single shell script?

Published on
#bash #bioinformatics #wget #fastq
17
Views

Where can I find RNA seq data (filename.fastq) for normal human sample?

Published on
#fastq #rna-seq
226
Views

How to filter a fastq file grepping a degenerate pattern?

Published on
#python #bash #filter #fastq
42
Views

R list path command only returns some of the files, but not all

Published on
#r #fastq
28
Views

Failed to process File Error occured while processing Fastq file on Ubuntu

Published on
#ubuntu #bioinformatics #fastq #rna-seq #sequencing
189
Views

Run of Mutiple fastq files for fastqc analysis

Published on
#bash #shell #fastq #google-genomics
265
Views

Snakemake use different wildcards in a rule

Published on
#python-3.x #wildcard #snakemake #fastq
20
Views

SyntaxError in python script that creates a qiime2 manifest file

Published on
#python #manifest #fastq #qiime
14
Views

how do I determine the source of a sequence in my final contigs

Published on
#sequence #fastq

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