I am trying to store a GenBank file that could be read by Geneious later. I found an example how to create the GenBank file here
But now I run into Alphabet issues.
I tried all protein classes from the documentation, but all fail with the same error:
TypeError: Invalid alphabet found, <class 'Bio.Alphabet.ProteinAlphabet'>.
I dont know what else to do here? Using biopython==1.73
record = SeqRecord.SeqRecord(
Seq.Seq("MIRQALAVAALLLAGTAQADGLIDN", alphabet=Alphabet.ProteinAlphabet),
id="FooBar",
)
with NamedTemporaryFile(mode="w") as genbank:
SeqIO.write(record, genbank, "genbank")
pass