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20
15
Views

Challenges with Fitting PGLS Models on Binary Trait Subsets Using caper in R

Published on
#r #phylogeny
19
Views

Phylogenetic Diversity of parasites in biogeographic regions ERROR in lm.fit

Published on
#r #function #dplyr #phylogeny
18
Views

D3 - Tree of life plot not showing data

Published on
#svg #d3.js #phylogeny
23
Views

memory management for large phylogenetic distance matrix saved as a pd.desc

Published on
#r #matrix #memory #phylogeny
22
Views

Editing list characters based on column values in a separate list

Published on
#r #list #phylogeny
18
Views

Is my interpretation of pglmm (package phyr) output correct? Does model specification make sense?

Published on
#covariance #phylogeny
16
Views

R 'phytools' dotTree function does not seem to accept my dataset/tree?

Published on
#r #phylogeny #ape-phylo
14
Views

What is wrong with my phylogenetic tree pipeline based on the core genome such that they are branching off too many times?

Published on
#bioinformatics #phylogeny #genome
63
Views

Painting phylogenetic trees with phytools by edge.length

Published on
#r #phylogeny #ape-phylo
19
Views

Rotating labels for networx object in R

Published on
#r #phylogeny
46
Views

How can I fix the Na/NaN function evaluation error

Published on
#r #phylogeny #ape
34
Views

Biopython PhyloTree to PyVis Network

Published on
#python #biopython #phylogeny
23
Views

Calculating variance-covariance matrix in R for Newick phylogeny

Published on
#r #matrix #phylogeny #covariance-matrix
52
Views

TreeNode printing and colorizing the branches

Published on
#r #colors #tree #nodes #phylogeny
19
Views

Using the Phylo library is there a way to create a distance matrix from a tree after you have already converted it from a dm to a tree?

Published on
#python #tree #phylogeny
18
Views

match metadata to phylo object to color tips by season

Published on
#r #plot #phylogeny
28
Views

tip labels and ASV names across a phylo, otu table, and tax table are not matching

Published on
#r #phylogeny
59
Views

BioPython phylo: collapsing nodes on tree if node in list and rename the respective collapsed node

Published on
#biopython #phylogeny
26
Views

How should I analyze differences between phyletic patterns?

Published on
#python #boolean #bioinformatics #phylogeny
48
Views

Phylogenetic comparative binomial models - What's the best tool to build them?

Published on
#r #binary #nlme #mcmc #phylogeny

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