Question

Merging 2 VCF files using bcftools, however how should I update the fields according to 2 VCF files

score 54 · Answer 1 · 2024-03-10T05:48:57.540000

54

Views

Merging 2 VCF files using bcftools, however how should I update the fields according to 2 VCF files

Published on 10 March 2024 at 05:48

score 48 · Answer 2 · 2024-03-08T14:46:45.760000

48

Views

I merged 2 VCF files using bcftools, however how should I update the fields according to 2 VCF files

Published on 08 March 2024 at 14:46

score 17 · Answer 3 · 2024-03-07T11:51:10.610000

17

Views

Filtering VCF files with bcftools

Published on 07 March 2024 at 11:51

score 22 · Answer 4 · 2024-03-07T04:29:10.233000

22

Views

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Published on 07 March 2024 at 04:29

score 14 · Answer 5 · 2024-02-25T03:33:17.053000

14

Views

How to extract all variant alleles that do not match "./." from the GT column of a vcf file?

Published on 25 February 2024 at 03:33

score 124 · Answer 6 · 2024-01-15T13:17:51.680000

124

Views

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score 168 · Answer 7 · 2023-12-21T19:44:03.173000

168

Views

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Published on 21 December 2023 at 19:44

score 215 · Answer 8 · 2023-12-13T13:27:24.890000

215

Views

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Published on 13 December 2023 at 13:27

score 95 · Answer 9 · 2023-11-09T16:19:56.063000

95

Views

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Published on 09 November 2023 at 16:19

score 35 · Answer 10 · 2023-09-26T22:00:23.927000

35

Views

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Published on 26 September 2023 at 22:00

score 21 · Answer 11 · 2023-09-21T17:35:27.990000

21

Views

BCFtools fails to read regions inside nested while loop / for loop

Published on 21 September 2023 at 17:35

score 59 · Answer 12 · 2023-09-18T15:17:51.073000

59

Views

How do I loop through bam files with different species designations and different sample sizes, and then pass them to the same command? - Bash

Published on 18 September 2023 at 15:17

score 171 · Answer 13 · 2023-09-08T21:31:16.130000

171

Views

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Published on 08 September 2023 at 21:31

score 68 · Answer 14 · 2023-07-28T21:32:58.210000

68

Views

How to sort entries with the same ID based off their allele frequency (AF) in a vcf file

Published on 28 July 2023 at 21:32

score 23 · Answer 15 · 2023-05-30T17:04:11.507000

23

Views

Extracting ITS Region from Paired-end FASTQ Data Using a Reference Genome: Guidance Needed

Published on 30 May 2023 at 17:04

score 274 · Answer 16 · 2023-05-05T18:29:15.367000

274

Views

how to modify individual codes in a vcf file

Published on 05 May 2023 at 18:29

score 92 · Answer 17 · 2023-01-16T16:35:24.253000

92

Views

Globbing a filename and then saving to a variable

Published on 16 January 2023 at 16:35

score 152 · Answer 18 · 2022-11-18T21:11:20.473000

152

Views

Bcftools 1.16 able to add F_MISSING tag?

Published on 18 November 2022 at 21:11

score 927 · Answer 19 · 2022-09-05T15:03:35.963000

927

Views

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Published on 05 September 2022 at 15:03

score 776 · Answer 20 · 2022-07-25T12:15:31.253000

776

Views

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Published on 25 July 2022 at 12:15

List Question

Merging 2 VCF files using bcftools, however how should I update the fields according to 2 VCF files

I merged 2 VCF files using bcftools, however how should I update the fields according to 2 VCF files

Filtering VCF files with bcftools

Separating alleles for 'bcftools merge' when ploidy >2

How to extract all variant alleles that do not match "./." from the GT column of a vcf file?

Error message with medaka pyabpoa and libgsl.so.25

BCFtools merge command collapsing non-identical variants to single record

How can I retrieve all variants only for a specific gene from VCF file using BCFTools?

Merging VCF Files and Expanding Metadata Efficiently

Error in the process of converting Whole Transcriptome Sequence data into Variant Calling Format Files

BCFtools fails to read regions inside nested while loop / for loop

How do I loop through bam files with different species designations and different sample sizes, and then pass them to the same command? - Bash

Segmentation fault: 11 during bcftools merge

How to sort entries with the same ID based off their allele frequency (AF) in a vcf file

Extracting ITS Region from Paired-end FASTQ Data Using a Reference Genome: Guidance Needed

how to modify individual codes in a vcf file

Globbing a filename and then saving to a variable

Bcftools 1.16 able to add F_MISSING tag?

Better splitting of mutliallelic sites then bcftools norm --m-any

bcftools mpileup failed, format error of index

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