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20
Devhide
2024-02-26T09:55:23.080000
42
Views
Samtools not working, but installing, because of libdeflate?
Published on
26 February 2024 at 09:55
#conda
#samtools
50
Views
samtools view -F option appears to not be functioning
Published on
19 February 2024 at 00:36
#linux
#ubuntu
#optional-parameters
#samtools
27
Views
samtools and seqkit installation failed with conda (bioconda)
Published on
30 January 2024 at 07:25
#conda
#bioinformatics
#samtools
#bioconda
165
Views
Issue Installing Bowtie2 and Samtools on Mac M2
Published on
14 December 2023 at 20:32
#installation
#samtools
#apple-m2
#mambaforge
#bowtie2
204
Views
Medaka: unrecognized command 'tools' and samtools not found
Published on
12 December 2023 at 02:02
#ubuntu
#bioinformatics
#samtools
152
Views
I made an error when using metawrap to binning
Published on
28 November 2023 at 01:51
#sequence
#binning
#samtools
101
Views
Corrupted sam file from bwa. [W::sam_parse1] mapped query cannot have zero coordinate; treated as unmapped
Published on
14 November 2023 at 21:42
#samtools
#burrows-wheeler-transform
35
Views
Error in the process of converting Whole Transcriptome Sequence data into Variant Calling Format Files
Published on
26 September 2023 at 22:00
#samtools
#bcftools
69
Views
issue with FreeBayes in the multibam version
Published on
20 September 2023 at 09:26
#vcf-variant-call-format
#samtools
#bam
#picard
232
Views
Singularity could not open image
Published on
08 September 2023 at 10:56
#image
#singularity-container
#nextflow
#samtools
227
Views
How to run a command on multiple files within subdirectories with similar file suffix?
Published on
16 July 2023 at 11:18
#unix
#command-line
#file-extension
#samtools
217
Views
Samtools mpileup : error reading from input file
Published on
14 July 2023 at 13:42
#r
#vcf-variant-call-format
#sequencing
#samtools
23
Views
Extracting ITS Region from Paired-end FASTQ Data Using a Reference Genome: Guidance Needed
Published on
30 May 2023 at 17:04
#bioinformatics
#samtools
#bcftools
107
Views
Pysam view yield reads one at a time
Published on
16 May 2023 at 15:58
#python
#bioinformatics
#samtools
#pysam
92
Views
Regular Expression - how to capture a number of characters specified in the string
Published on
27 April 2023 at 14:37
#python
#regex
#samtools
83
Views
Problem with viewing bam file downloaded from geo
Published on
21 April 2023 at 14:10
#samtools
#bam
136
Views
How do I resolve the "inconsistent chromosome block error?
Published on
17 April 2023 at 10:45
#bioinformatics
#samtools
27
Views
pileup "]" meaning in read-bases column
Published on
14 April 2023 at 13:48
#bioinformatics
#samtools
224
Views
Snakemake: MissingInputException in rule - Missing input files for rule sam_to_bam:
Published on
21 March 2023 at 19:23
#input
#workflow
#sample
#snakemake
#samtools
127
Views
Split a SAM file in Awk keeping N number of lines as header
Published on
16 February 2023 at 10:26
#awk
#bioinformatics
#samtools
#bam
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