DEVHIDE
Login Or Sign up

List Question

20
54
Views

Merging 2 VCF files using bcftools, however how should I update the fields according to 2 VCF files

Published on
#variant #vcf-variant-call-format #bcftools #genomics
22
Views

Separating alleles for 'bcftools merge' when ploidy >2

Published on
#bioinformatics #vcf-variant-call-format #bcftools #vcftools
39
Views

How to write dataframe after converting vcf file to tidy dataframe with vcfR2tidy function in R

Published on
#r #dataframe #tidyr #vcf-variant-call-format
26
Views

Lack of consistency between snpEff annotation vcf file and the summary statitics generated

Published on
#grep #vcf-variant-call-format
168
Views

BCFtools merge command collapsing non-identical variants to single record

Published on
#merge #vcf-variant-call-format #bcftools
163
Views

iterating on vcf file using cyvcf2

Published on
#python #csv #iterator #vcf-variant-call-format
95
Views

Merging VCF Files and Expanding Metadata Efficiently

Published on
#python #optimization #bioinformatics #vcf-variant-call-format #bcftools
332
Views

base recalibrator --known-sites argument does not work

Published on
#java #windows-subsystem-for-linux #ubuntu-20.04 #vcf-variant-call-format #gatk
40
Views

How to convert the variant call format file (.vcf file) into a txt file with R?

Published on
#r #vcf-variant-call-format
105
Views

Outputting two different gsub results to two columns with AWK

Published on
#bash #awk #bioinformatics #vcf-variant-call-format
172
Views

Extract summary statistic (beta, SE, EA, non-EA, EA frequency) from csv files (extracted from vcf) not working

Published on
#r #vcf-variant-call-format #vcftools #gwas
21
Views

BCFtools fails to read regions inside nested while loop / for loop

Published on
#bash #for-loop #while-loop #vcf-variant-call-format #bcftools
69
Views

issue with FreeBayes in the multibam version

Published on
#vcf-variant-call-format #samtools #bam #picard
28
Views

Error when segregating sites of vcf using vcfR::seg.sites "Error in latag2n(x) : no method for coercing this S4 class to a vector"

Published on
#r #bioinformatics #vcf-variant-call-format
201
Views

"File does not exist" error when running ensembl-vep with docker

Published on
#bash #bioinformatics #vcf-variant-call-format
68
Views

How to sort entries with the same ID based off their allele frequency (AF) in a vcf file

Published on
#bioinformatics #vcf-variant-call-format #bcftools
71
Views

MAFTOOLS: Adding variants from amplicon sequenced data to MAF file generated by WES data

Published on
#r #merge #rbind #vcf-variant-call-format
217
Views

Samtools mpileup : error reading from input file

Published on
#r #vcf-variant-call-format #sequencing #samtools
163
Views

Modify VCF FORMAT field from GT to DS manually?

Published on
#vcf-variant-call-format
229
Views

Extracting vcf columns substring with awk

Published on
#bash #awk #bioinformatics #vcf-variant-call-format

Trending Questions

Popular # Hahtags

javascript python java c# php android html jquery c++ css ios sql mysql r reactjs node.js arrays c asp.net json

Popular Questions

.

Copyright © 2021 Jogjafile Inc.