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20
Devhide
2024-03-27T16:34:43.673000
27
Views
PubTator API doesn't return session number as expected
Published on
27 March 2024 at 16:34
#ncbi
#pubmed-api
21
Views
How do I pull down single cell RNA sequencing data from NCBI and process with python?
Published on
11 March 2024 at 19:23
#python
#fastq
#ncbi
#rna-seq
57
Views
What does this BLASTN mean: Error pre-fetching sequence data?
Published on
28 January 2024 at 20:52
#bioinformatics
#blast
#ncbi
112
Views
Biopython bioSQL Unable to remove database using server.remove_database('dbname')
Published on
01 December 2023 at 05:57
#python
#mysql
#biopython
#ncbi
113
Views
Searching Entrez based on paper title
Published on
02 November 2023 at 18:31
#python
#biopython
#ncbi
#pubmed
168
Views
Adding retry to shell script
Published on
23 September 2023 at 21:18
#shell
#fastq
#ncbi
#common-workflow-language
85
Views
Extracting viral host from Genbank record or Entrez query
Published on
02 August 2023 at 00:00
#python
#bioinformatics
#biopython
#ncbi
208
Views
Awk command to set variable name while matching a regular expression
Published on
26 July 2023 at 11:32
#bash
#awk
#grep
#cut
#ncbi
551
Views
How to retrieve NCBI Entrez summary using gene name with Biopython?
Published on
20 July 2023 at 07:09
#python
#xml
#bioinformatics
#biopython
#ncbi
40
Views
Why would a special character cause an R function to drop components of the search string?
Published on
15 June 2023 at 16:56
#r
#string
#search
#ncbi
36
Views
Querying NCBI for genome version across different species using biopython
Published on
13 June 2023 at 21:07
#python
#bioinformatics
#biopython
#ncbi
35
Views
Why does my pattern extractor code return false positives?
Published on
13 June 2023 at 10:26
#python
#web-scraping
#biopython
#ncbi
#rentrez
67
Views
Downloading genes or Genomes from NCBI
Published on
04 June 2023 at 22:29
#sequence
#bioinformatics
#taxonomy
#biopython
#ncbi
124
Views
Why does my for loop in Python never stop running?
Published on
30 May 2023 at 19:13
#python
#biopython
#blast
#ncbi
#rentrez
433
Views
How to generate a PSSM matrix using PSI BLAST from BioPython
Published on
23 May 2023 at 07:52
#python
#python-3.x
#biopython
#ncbi
26
Views
Open a NCBI BLAST generated file in python
Published on
19 May 2023 at 08:52
#python
#python-3.x
#blast
#ncbi
181
Views
I'm getting error "urllib.error.HTTPError: HTTP Error 400: Bad Request" for programmatic access to NCBI Entrez
Published on
20 April 2023 at 04:07
#api
#urllib2
#biopython
#http-error
#ncbi
643
Views
NCBI blast+ from commandline not recognizing the blastn command
Published on
05 April 2023 at 13:42
#python
#jupyter-notebook
#blast
#ncbi
83
Views
NCBI Rentrez timeout HTTP failure 400
Published on
12 March 2023 at 14:14
#r
#httr
#ncbi
#rentrez
110
Views
Can I use Entrez Direct to query multiple nucleotide accession version identifiers against a database without using epost?
Published on
08 February 2023 at 16:44
#bioinformatics
#dna-sequence
#ncbi
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