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20
Devhide
2023-04-06T21:47:58.797000
89
Views
changing column values in tab delaminated file with awk without changing values in other columns
Published on
06 April 2023 at 21:47
#awk
#bioinformatics
#gff
88
Views
htseq-count does not generate read counts as expected
Published on
21 March 2023 at 12:59
#linux
#rna-seq
#gff
117
Views
Bash code with if/else/fi and awk/perl regexps does work outside snakemake but not inside a snakemake rule
Published on
08 March 2023 at 12:28
#regex
#awk
#snakemake
#gtfs
#gff
74
Views
AWK replace full string in TABLE2 according to TABLE1
Published on
02 February 2023 at 15:19
#awk
#bioinformatics
#gff
145
Views
sed using while loop is very slow
Published on
27 December 2022 at 12:23
#bash
#awk
#while-loop
#bioinformatics
#gff
36
Views
Handleing gff file from MISA
Published on
16 November 2022 at 14:25
#bash
#bioinformatics
#dna-sequence
#gff
53
Views
Iterating through Pandas dataframe and dictionary items
Published on
13 October 2022 at 21:44
#pandas
#dataframe
#numpy
#fasta
#gff
196
Views
How to print fields containing specific substrings with awk?
Published on
23 June 2022 at 21:39
#bash
#awk
#sed
#bioinformatics
#gff
1.9k
Views
Biopython parsing over gff features to extract CDS
Published on
16 May 2022 at 17:43
#python
#biopython
#fasta
#gff
56
Views
Adding data to a dataframe based on groups
Published on
02 March 2021 at 12:33
#r
#dplyr
#file-import
#gff
192
Views
Sed function in shell applied to all .gff files in a directory
Published on
01 March 2021 at 07:53
#shell
#sed
#bioinformatics
#gff
49
Views
Problem in merging a gff file and a csv file in R
Published on
18 November 2020 at 19:08
#r
#csv
#bioinformatics
#bioconductor
#gff
239
Views
Bcbio-gff File creation issue
Published on
23 April 2020 at 11:12
#python
#bioinformatics
#biopython
#gff
1.4k
Views
Cell value to column name in pandas
Published on
28 March 2020 at 09:51
#python
#pandas
#dataframe
#gff
164
Views
HTSeq-count is returning 0 for every gene, instead of expression value
Published on
04 March 2020 at 02:14
#bioinformatics
#gff
96
Views
How to convert output of Emboss:Palindrome into gff/bed file (perl)
Published on
25 November 2019 at 10:42
#perl
#palindrome
#emboss
#gff
609
Views
How to convert Ensembl .gff3 to 12-column .bed
Published on
27 September 2019 at 15:23
#file-conversion
#rna-seq
#gff
45
Views
What kind of error should be checked by a validator while validating biological file formats like GFF and FASTA
Published on
22 March 2019 at 04:52
#fasta
#gff
157
Views
How can I find the number of the first base of a gene in a FASTA file?
Published on
14 January 2019 at 21:31
#bioinformatics
#dna-sequence
#gff
622
Views
Convert String array to JSONArray
Published on
24 July 2018 at 16:51
#java
#arrays
#json
#javafx
#gff
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