Question

filter bam after alignment

score 77 · Answer 1 · 2024-01-10T11:44:54.170000

77

Views

filter bam after alignment

Published on 10 January 2024 at 11:44

score 38 · Answer 2 · 2024-01-06T20:28:02.123000

38

Views

problem with feature counts of RNA bulk seq paired data- in Rsubread

Published on 06 January 2024 at 20:28

score 114 · Answer 3 · 2023-12-22T18:10:43.090000

114

Views

How do i get and use AlignmentHeader from pysam?

Published on 22 December 2023 at 18:10

score 291 · Answer 4 · 2023-11-16T16:20:26.077000

291

Views

Extract Reads by region from a BAM file

Published on 16 November 2023 at 16:20

score 69 · Answer 5 · 2023-09-20T09:26:54.153000

69

Views

issue with FreeBayes in the multibam version

Published on 20 September 2023 at 09:26

score 83 · Answer 6 · 2023-06-24T20:54:15.687000

83

Views

Statistically comparing two surfaces (gams)

Published on 24 June 2023 at 20:54

score 40 · Answer 7 · 2023-05-12T11:39:20.353000

40

Views

bam-readcount: command not found

Published on 12 May 2023 at 11:39

score 83 · Answer 8 · 2023-04-21T14:10:36.827000

83

Views

Problem with viewing bam file downloaded from geo

Published on 21 April 2023 at 14:10

score 19 · Answer 9 · 2023-04-18T15:58:08.923000

19

Views

BaseRecalibration by GATK

Published on 18 April 2023 at 15:58

score 59 · Answer 10 · 2023-04-07T16:32:25.597000

59

Views

Error using BWA to map environmental transcriptome against a genomic reference

Published on 07 April 2023 at 16:32

score 127 · Answer 11 · 2023-02-16T10:26:02.887000

127

Views

Split a SAM file in Awk keeping N number of lines as header

Published on 16 February 2023 at 10:26

score 223 · Answer 12 · 2023-01-03T14:20:14.477000

223

Views

MissingOutputException snakemake

Published on 03 January 2023 at 14:20

score 230 · Answer 13 · 2022-12-06T07:42:39.733000

230

Views

pilon error, file .bam must be indexed BAM

Published on 06 December 2022 at 07:42

score 143 · Answer 14 · 2022-12-05T15:55:56.363000

143

Views

CRISPR genome wide screen analysis using MAGeCK-- Loss of reads/sgRNA using MAGeCK count function?

Published on 05 December 2022 at 15:55

score 686 · Answer 15 · 2022-11-26T15:38:56.767000

686

Views

sum elements in python list if match condition

Published on 26 November 2022 at 15:38

score 284 · Answer 16 · 2022-08-04T08:51:14.893000

284

Views

Sort vec of structs by custom (natural?) order of String field and numeric field

Published on 04 August 2022 at 08:51

score 52 · Answer 17 · 2022-06-28T08:37:05.007000

52

Views

What is the best way to use expand() with one unknown variable in Snakemake?

Published on 28 June 2022 at 08:37

score 187 · Answer 18 · 2022-06-14T08:01:59.947000

187

Views

Find sequencing reads with insertions longer than number

Published on 14 June 2022 at 08:01

score 2k · Answer 19 · 2022-05-31T08:16:15.397000

2k

Views

Bash: Extract reads from BAM files based on read length

Published on 31 May 2022 at 08:16

score 577 · Answer 20 · 2022-05-07T09:06:56.873000

577

Views

convert CRAM file to SAM file

Published on 07 May 2022 at 09:06

List Question

filter bam after alignment

problem with feature counts of RNA bulk seq paired data- in Rsubread

How do i get and use AlignmentHeader from pysam?

Extract Reads by region from a BAM file

issue with FreeBayes in the multibam version

Statistically comparing two surfaces (gams)

bam-readcount: command not found

Problem with viewing bam file downloaded from geo

BaseRecalibration by GATK

Error using BWA to map environmental transcriptome against a genomic reference

Split a SAM file in Awk keeping N number of lines as header

MissingOutputException snakemake

pilon error, file .bam must be indexed BAM

CRISPR genome wide screen analysis using MAGeCK-- Loss of reads/sgRNA using MAGeCK count function?

sum elements in python list if match condition

Sort vec of structs by custom (natural?) order of String field and numeric field

What is the best way to use expand() with one unknown variable in Snakemake?

Find sequencing reads with insertions longer than number

Bash: Extract reads from BAM files based on read length

convert CRAM file to SAM file

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